rs236127398 SNP Detail

Summary

• ID
  rs236127398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:60214400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTCTATT GGCTATTTCT TATTTtatgt
  atgtatgtat gtatgtatgt atgtatgtat gtatgtatgt atgtatgtat gaatatatat
  attgagacag ggtctcatgt agctcagggt ggtctcaaat ttaagatata gttaagaatg
  R
  ccttgaactg ctgctctggc ctctgacacc ttctaagtgt ctggatgata ggcatgtgcc
  tgtaccatca agcctggctc tTCTGACTCT TGTGGCAAGG GTAGGCAGAG CCAGTGGGTG
  CTCACCTTGA GGATGTAGTG GTCCAGTTCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325221	CHEV_10_59841369	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236127398					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60214400 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdh23	cadherin related 23 (otocadherin)			Intron
				Noncoding-Transcript-Variant
Rr432129	regulatory region 432129			1447 bp proximal
Tssr93630	transcription start site region 93630			1966 bp upstream
Tssr97724	transcription start site region 97724			1601 bp downstream