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rs236131815 SNP Detail
Summary
  • ID
    rs236131815
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:46140194 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAAGAGCTG GACACCCAGA
CTGTCGGAGA GCTCCGGGGA GGTAAGTGCT GCTACCTGCC TTCGGTGGCT CTGGCTCCAT
AGCGCCTCCC AGTTGATGCT CCACTGTCCA AATCAATACC GTGGATATCT CGCACCTTTA
GCCATTCTAG CCAATGCTTC CATGGGCTTG AATTGTGTGT GGAGCCTTTC CATGACAATG
Y
CTCCCTTCAG CCCAGCCCTC CTCCTCCTTC TTCTTCTTCA GGTCACCCAC ACCCTTCAGG
ATGAAAGCTG TGGTGCTGGC CGTGGCTCTG GTCTTCCTGA CAGGTAGGTG CCTCTTGACC
TGCGTGGGAC TACCTTCCTG GGCACAGAGA ACAGAATTCC CACTGTTCTC TTCCCTGACT
CCGAGTCTAA CCTAACATGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377451211 MGP_WTSI_9_46036979 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236131815 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss377451211 MGP_WTSI_9_46036979 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:46140194 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoa1 apolipoprotein A-I within coordinates
Cpgi21701 CpG island 21701 1050 bp proximal
Gm67994 predicted gene, 67994 599 bp downstream
Rr195182 regulatory region 195182 within coordinates
Rr195183 regulatory region 195183 607 bp proximal
Rr206362 regulatory region 206362 within coordinates
Tssr84839 transcription start site region 84839 522 bp downstream
Tssr84840 transcription start site region 84840 182 bp downstream
Tssr84841 transcription start site region 84841 52 bp downstream
Tssr84842 transcription start site region 84842 32 bp upstream
Tssr84843 transcription start site region 84843 55 bp upstream
Tssr84844 transcription start site region 84844 214 bp upstream
Tssr84845 transcription start site region 84845 266 bp upstream
Tssr84846 transcription start site region 84846 305 bp upstream
Tssr84847 transcription start site region 84847 926 bp upstream
Tssr84848 transcription start site region 84848 1013 bp upstream
Tssr84849 transcription start site region 84849 1105 bp upstream
Tssr84850 transcription start site region 84850 1145 bp upstream
Tssr84851 transcription start site region 84851 1189 bp upstream
Tssr84852 transcription start site region 84852 1208 bp upstream
Tssr84853 transcription start site region 84853 1306 bp upstream
Tssr84854 transcription start site region 84854 1336 bp upstream
Tssr84855 transcription start site region 84855 1355 bp upstream
Tssr84856 transcription start site region 84856 1371 bp upstream
Tssr84857 transcription start site region 84857 1489 bp upstream
Tssr84858 transcription start site region 84858 1508 bp upstream
Tssr89313 transcription start site region 89313 1038 bp downstream
Tssr89314 transcription start site region 89314 1098 bp downstream
Tssr89315 transcription start site region 89315 1112 bp downstream
Tssr89316 transcription start site region 89316 1140 bp downstream
Tssr89317 transcription start site region 89317 1152 bp downstream
Tssr89318 transcription start site region 89318 1174 bp downstream
Tssr89319 transcription start site region 89319 1188 bp downstream
Tssr89320 transcription start site region 89320 1197 bp downstream
Tssr89321 transcription start site region 89321 1219 bp downstream
Tssr89322 transcription start site region 89322 1265 bp downstream
Tssr89323 transcription start site region 89323 1330 bp downstream
Tssr89324 transcription start site region 89324 1380 bp downstream
Tssr89325 transcription start site region 89325 1404 bp downstream
Tssr89326 transcription start site region 89326 1444 bp downstream
Tssr89327 transcription start site region 89327 1565 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory