rs236138051 SNP Detail

Summary

• ID
  rs236138051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142205869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGCCAG GTAGCGACCT
  TCTCAATTCC TTTTATTTCT CTGTGGGTGC GTGGCCAGCA CCCCACAGAG ACTCCACTCC
  CAACTCAGGC CAAGCGATAG AGAGAGATAA AAAAAAAAAT CAAGGTTGTG GAGAGCAGGA
  CATTGTGGTA GCCGGTGTTG ATGGCTCTAG CTGGTGTTGA TGGCTCGATG CATTCATTAC
  Y
  TGATCACTGC TCCCGTTATG TAGGGAATGG GTACAATTGA TTATGAGCGC ATAAAAAGCT
  AAGGAGGGAT TAAAAAAAAA AGGAAAAAAC CGGCCCCAGA AATAAAAAGA GGGGAATAGA
  TCAATTGGCA TAAAATTTGG GGTCCTAATT CTTCAGTAAT TCTGCAAGTT GACCTGTGAC
  TCCTCCTGAT TCTTCCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454544	MGP_WTSI_7_149838037	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236138051					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454544	MGP_WTSI_7_149838037	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142205869 () rs orientation: forward

Symbol	Name	Function Class
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	781 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Rr167001	regulatory region 167001	1531 bp proximal
Tssr2462	transcription start site region 2462	914 bp upstream
Tssr2463	transcription start site region 2463	1712 bp downstream
Tssr70229	transcription start site region 70229	812 bp upstream
Tssr70230	transcription start site region 70230	944 bp upstream
Tssr70231	transcription start site region 70231	1421 bp upstream
Tssr70232	transcription start site region 70232	1457 bp upstream
Tssr70233	transcription start site region 70233	1507 bp upstream
Tssr70234	transcription start site region 70234	1533 bp upstream
Tssr70235	transcription start site region 70235	1569 bp upstream
Tssr70236	transcription start site region 70236	1601 bp upstream
Tssr70237	transcription start site region 70237	1697 bp upstream
Tssr70238	transcription start site region 70238	1716 bp upstream
Tssr70239	transcription start site region 70239	1860 bp upstream
Tssr75846	transcription start site region 75846	1320 bp upstream
Tssr75847	transcription start site region 75847	1041 bp upstream
Tssr75848	transcription start site region 75848	1007 bp upstream
Tssr75849	transcription start site region 75849	787 bp upstream
Tssr75850	transcription start site region 75850	741 bp upstream
Tssr75851	transcription start site region 75851	728 bp upstream
Tssr75852	transcription start site region 75852	538 bp upstream
Tssr75853	transcription start site region 75853	497 bp upstream
Tssr75854	transcription start site region 75854	90 bp upstream
Tssr75855	transcription start site region 75855	61 bp downstream
Tssr75856	transcription start site region 75856	121 bp downstream
Tssr75857	transcription start site region 75857	135 bp downstream
Tssr75858	transcription start site region 75858	164 bp downstream
Tssr75859	transcription start site region 75859	227 bp downstream
Tssr75860	transcription start site region 75860	284 bp downstream
Tssr75861	transcription start site region 75861	311 bp downstream
Tssr75862	transcription start site region 75862	860 bp downstream
Tssr75863	transcription start site region 75863	879 bp downstream
Tssr75864	transcription start site region 75864	917 bp downstream
Tssr75865	transcription start site region 75865	940 bp downstream
Tssr75866	transcription start site region 75866	995 bp downstream
Tssr75867	transcription start site region 75867	1038 bp downstream
Tssr75868	transcription start site region 75868	1061 bp downstream
Tssr75869	transcription start site region 75869	1071 bp downstream
Tssr75870	transcription start site region 75870	1092 bp downstream
Tssr75871	transcription start site region 75871	1133 bp downstream
Tssr75872	transcription start site region 75872	1534 bp downstream
Tssr75873	transcription start site region 75873	1556 bp downstream
Tssr75874	transcription start site region 75874	1765 bp downstream
Tssr75875	transcription start site region 75875	1802 bp downstream
Tssr75876	transcription start site region 75876	1834 bp downstream
Tssr75877	transcription start site region 75877	1910 bp downstream