rs236144027 SNP Detail

Summary

• ID
  rs236144027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67738100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGAGTG TCTCAGGGCC
  AAGAAGCTGC AAGTGTTCCA GGACCAAGAG GAGGCTACAA GTGTCTCTGG GCCAAGAGTC
  TCTGTGCATC TCATGGCCAA GCGACCTTAG GTGTCCAGGG CTCCAGGGAA GCCGCGCTCA
  TAGCAGTAGC AGAGAGCCCA GCAGCAGCTC GCCCTGGCCC AGCCGCCGTC CCTTGCTCTC
  Y
  GCCTTGATGC GCACGGCCAG GCGGCGCAGC TGCTCCTCCG GGAGCCGGTC AAAGCAGCAG
  TCCTGGTCCA GGGCGGCCTT GCGGCTGCGG CGGACCACAC TGGCACGCTG CTGGCCCGAC
  GGCCTCAGCA CCAGGCTGAG GCGGCAGCCC AGGGCGCGGG GTTCCAGCGC GGCGGCCGGG
  CCCTCAGCGC GCAGCAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322992776	CHEV_9_67678625	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236144027					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67738100 () rs orientation: forward

Symbol	Name	Function Class
C2cd4a	C2 calcium-dependent domain containing 4A	within coordinates
Cpgi21983	CpG island 21983	within coordinates
Rr206662	regulatory region 206662	within coordinates
Tssr90357	transcription start site region 90357	1507 bp downstream