rs236147329 SNP Detail

Summary

• ID
  rs236147329
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:103063753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGGACA AATAGGGACT
  CTGAGGGACA TTTCACACTA GGCTAGCTTT GGACTTCCCT GTCTCTCCAC CTGCCCCTAA
  CTCCCTCTTC CTCAGATCCA GGCCTTGGCC AAGCTCAGCA GAGCTGAGCA AGTGGGGGAG
  GGGGTCATAT TAGGAGCCTG GGTGATGGCA GGTTCAGCCT GTCAGGAGGG CCATGGGTTC
  K
  ATTTTCCCTT AATGGGTGTG TCTATGGATA AGGGATAGTT CTTGGCCAAT CTGTTAGGTC
  AGGTACACTA ATGGGAAGGA GCCTTGTGAA TAATTCAGAC CAGTGGAAAT TCCAAAAGTC
  AAGTGCAAGA CTTAATTGCC CTGGGTGGAT TTTCGGCTGT GATGGTCGGA TAGGAAATGC
  TGCTGAAAAC CCCTGAGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517833	MGP_WTSI_11_103034241	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236147329					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517833	MGP_WTSI_11_103034241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103063753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	1134 bp distal
Fmnl1	formin-like 1	Intron
Rr457539	regulatory region 457539	1604 bp distal
Rr457540	regulatory region 457540	1989 bp distal
Rr457541	regulatory region 457541	506 bp distal
Rr457542	regulatory region 457542	184 bp proximal
Rr457543	regulatory region 457543	461 bp proximal
Tssr105321	transcription start site region 105321	1949 bp downstream
Tssr105322	transcription start site region 105322	1918 bp downstream
Tssr105323	transcription start site region 105323	1805 bp downstream
Tssr111157	transcription start site region 111157	1969 bp downstream