rs236151824 SNP Detail

Summary

• ID
  rs236151824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72866871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATTCTT TCTAATAGAG
  AAGGTAAGAT CACAGCAAAA ATTTTGGGCT CCCGAGGCCA CCTCAATACC ACTACACTAC
  TATGATTGAC ACAATCTCCC CTTCTACTCC CGCCACGTTC CTGAAGGTTT TTCCTCTATT
  CATCCAGGAA CCTACAGGTT CTCCCCCAGC CAACACCTGC GCGCACTAAT TCCCTGGTTC
  Y
  GATCAACAAG TTCAATAGCT GGGGCACAAG TCACTAGACT CACCTGTCTG CTCCCACTTT
  GGCTCCTGGT CCCGACTCCC TCTTTTCTCT ACACTCAGCC CTAGTATATT TCAGTGCACA
  TCATCCTGGA CACATTTCAC TAAAGTACTC TCAGGGTGCA CACACAGAAA GTATAGACGC
  GCGGGGCTGG CAAGCCTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403776363	MGP_WTSI_X_71068604	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236151824					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403776363	MGP_WTSI_X_71068604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72866871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22781	CpG island 22781	144 bp proximal
Cpgi22782	CpG island 22782	875 bp proximal
Pdzd4	PDZ domain containing 4	within coordinates
Rr8723	regulatory region 8723	within coordinates
Rr10008	regulatory region 10008	1871 bp distal
Rr395204	regulatory region 395204	1102 bp downstream
Tssr163577	transcription start site region 163577	1088 bp downstream
Tssr163578	transcription start site region 163578	1140 bp downstream
Tssr163579	transcription start site region 163579	1170 bp downstream
Tssr163580	transcription start site region 163580	1284 bp downstream
Tssr163581	transcription start site region 163581	1636 bp downstream
Tssr163582	transcription start site region 163582	1673 bp downstream
Tssr163583	transcription start site region 163583	1728 bp downstream