rs236160549 SNP Detail

Summary

• ID
  rs236160549
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24003928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTCTAG AAGCTGCAAG
  AGGCAAATTA AATGTTTCTC TCCTTGTCCG GGCAGTGGTG GTGCATGCCT TTAATCCCAG
  CACTTGGGAG GCAGAGGCAG GTAGATTTCT GAGTTTGAGG CCAGCCTGGT CTACAGAGTG
  AATTCCAGGA CAGCCAGGGC TACACAGAGA AACCCTGTCT CAAAAAAACA AACAAACAAA
  C
  AAACAAAAAA TGTTTTTCTC CTAAAGCCTC AGGAATGAAT ACAGCCCTGC TGTATTCAGC
  CTGCTGTATA ACACCCACAT CTGACTTCTA GCCTCTAAAA TATACGACAA TAATGTGTCA
  TTTTAATAAT GTGTCACTAG ATGGGTGGTG ATTGTTGTTT TGATGGCCAT AGAACAGTTA
  AAAGTCCAAA CTCTTACTGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397842202	MGP_WTSI_17_23921921	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236160549					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397842202	MGP_WTSI_17_23921921	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24003928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	817 bp proximal
Flywch2	FLYWCH family member 2	within coordinates
Rr523143	regulatory region 523143	330 bp proximal
Rr523144	regulatory region 523144	1117 bp proximal
Rr523145	regulatory region 523145	1418 bp proximal
Tssr146663	transcription start site region 146663	1092 bp downstream
Tssr146664	transcription start site region 146664	1137 bp downstream
Tssr146665	transcription start site region 146665	1243 bp downstream