rs236163530 SNP Detail

Summary

• ID
  rs236163530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86930099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACCCGT GGGGCGGAGG
  CAGCACCGCG GCGCTGGCCG GGCCGTTAAG CAGCGTCTGC GGCAATAGGT TGGGGGGCAC
  GGTTAGCTGA GGTCCCCCGC CACCACCCGG GTTGGGCAGC CCGGTCACCA ACCCACTATG
  CGTCCCACGC CGAGAAGCCA CCGATGTTGC TGCTGAGGAT GAGTTGGGGC TCTGGCGGTT
  Y
  AGCTCCGGGG GGCCTTCCTC TGGTGCCGGC TTGGGGAAGC CGTTAGGACC TCCCAGGCCG
  TTGGGCAGCC GGGCGGCGTG GCTGCTGCTC CCCAGACTCA CCGGAGGAGG CGGATACTCG
  AACCGGCTGC GTTGTTCCAC CGCAGCGGCG GCGGCAGCCG CGGCGGCCGC TGCGCTCAGG
  CCATAACGCT CCAGACCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss386770228	MGP_WTSI_12_88224275	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236163530					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386770228	MGP_WTSI_12_88224275	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86930099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4926	CpG island 4926	within coordinates
Irf2bpl	interferon regulatory factor 2 binding protein-like	within coordinates
Rr387576	regulatory region 387576	within coordinates
Tssr3903	transcription start site region 3903	745 bp downstream
Tssr117130	transcription start site region 117130	587 bp downstream
Tssr117131	transcription start site region 117131	620 bp downstream
Tssr117132	transcription start site region 117132	1076 bp downstream
Tssr117133	transcription start site region 117133	1141 bp downstream
Tssr117134	transcription start site region 117134	1378 bp downstream
Tssr117135	transcription start site region 117135	1391 bp downstream
Tssr117136	transcription start site region 117136	1431 bp downstream
Tssr117137	transcription start site region 117137	1483 bp downstream
Tssr117138	transcription start site region 117138	1521 bp downstream