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rs236165093 SNP Detail
Summary
  • ID
    rs236165093
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93350708 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAATTGAACT CAGGACTTAT
GGAAGAGCAG TCAAGTGCTC TTAGCGGCTA AACCATCTCT CCAGCTCCTC TGTGCATTTT
CTAATCGCTC CAAATAGTCC CCTCCCCAAA ACAAACGTGA GTGCAAAAGT TTACTACTTG
TAAATAATTA ATTATAAAAC TTTTTTGTTT GTTTGTTTTA ATCTTTTCAT AGAGACCACA
K
GACCCTGAGA CGATAGACCT GACCCTAGAA CTTCTGGATC GCGACTGCAA CGGGCGTGTT
GATTTCAACG AATTCCTCCT GTTCCTTTTC AAGATTGCTC AAGCTTGCTA TTATGCTCTC
GATCAGGCCG CAGAGCTAGG CGAGAAGAGA GCCCTGCCCA ATGAAAAGAG GAACCTGTCA
CAAGATCGCA GGCAAGAAGA                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876306 MGP_WTSI_3_93247323 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236165093 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876306 MGP_WTSI_3_93247323 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93350708 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 124 bp proximal
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 26 bp upstream
Tssr961 transcription start site region 961 602 bp upstream
Tssr962 transcription start site region 962 1722 bp upstream
Tssr963 transcription start site region 963 1759 bp upstream
Tssr964 transcription start site region 964 1855 bp upstream
Tssr30345 transcription start site region 30345 1012 bp downstream
Tssr30346 transcription start site region 30346 987 bp downstream
Tssr30347 transcription start site region 30347 50 bp upstream
Tssr30348 transcription start site region 30348 89 bp upstream
Tssr30349 transcription start site region 30349 95 bp upstream
Tssr30350 transcription start site region 30350 137 bp upstream
Tssr30351 transcription start site region 30351 168 bp upstream
Tssr30352 transcription start site region 30352 217 bp upstream
Tssr30353 transcription start site region 30353 229 bp upstream
Tssr30354 transcription start site region 30354 247 bp upstream
Tssr30355 transcription start site region 30355 266 bp upstream
Tssr30356 transcription start site region 30356 279 bp upstream
Tssr30357 transcription start site region 30357 377 bp upstream
Tssr30358 transcription start site region 30358 492 bp upstream
Tssr30359 transcription start site region 30359 521 bp upstream
Tssr30360 transcription start site region 30360 551 bp upstream
Tssr30361 transcription start site region 30361 876 bp upstream
Tssr30362 transcription start site region 30362 890 bp upstream
Tssr30363 transcription start site region 30363 1033 bp upstream
Tssr30364 transcription start site region 30364 1104 bp upstream
Tssr30365 transcription start site region 30365 1139 bp upstream
Tssr30366 transcription start site region 30366 1191 bp upstream
Tssr30367 transcription start site region 30367 1235 bp upstream
Tssr30368 transcription start site region 30368 1252 bp upstream
Tssr30369 transcription start site region 30369 1265 bp upstream
Tssr30370 transcription start site region 30370 1272 bp upstream
Tssr30371 transcription start site region 30371 1292 bp upstream
Tssr30372 transcription start site region 30372 1305 bp upstream
Tssr30373 transcription start site region 30373 1356 bp upstream
Tssr30374 transcription start site region 30374 1374 bp upstream
Tssr30375 transcription start site region 30375 1387 bp upstream
Tssr30376 transcription start site region 30376 1413 bp upstream
Tssr30377 transcription start site region 30377 1435 bp upstream
Tssr30378 transcription start site region 30378 1468 bp upstream
Tssr30379 transcription start site region 30379 1486 bp upstream
Tssr30380 transcription start site region 30380 1566 bp upstream
Tssr30381 transcription start site region 30381 1584 bp upstream
Tssr30382 transcription start site region 30382 1643 bp upstream
Tssr30383 transcription start site region 30383 1654 bp upstream
Tssr30384 transcription start site region 30384 1663 bp upstream
Tssr30385 transcription start site region 30385 1679 bp upstream
Tssr30386 transcription start site region 30386 1700 bp upstream
Tssr30387 transcription start site region 30387 1791 bp upstream
Tssr30388 transcription start site region 30388 1817 bp upstream
Tssr30389 transcription start site region 30389 1831 bp upstream
Tssr30390 transcription start site region 30390 1903 bp upstream
Tssr30391 transcription start site region 30391 1922 bp upstream
Tssr30392 transcription start site region 30392 1940 bp upstream
Tssr30393 transcription start site region 30393 1957 bp upstream
Tssr30394 transcription start site region 30394 1977 bp upstream
Tssr34352 transcription start site region 34352 463 bp downstream
Tssr34353 transcription start site region 34353 484 bp downstream
Tssr34354 transcription start site region 34354 494 bp downstream
Tssr34355 transcription start site region 34355 632 bp downstream
Tssr34356 transcription start site region 34356 1304 bp downstream
Tssr34357 transcription start site region 34357 1349 bp downstream
Tssr34358 transcription start site region 34358 1401 bp downstream
Tssr34359 transcription start site region 34359 1470 bp downstream
Tssr34360 transcription start site region 34360 1551 bp downstream
Tssr34361 transcription start site region 34361 1572 bp downstream
Tssr34362 transcription start site region 34362 1621 bp downstream
Tssr34363 transcription start site region 34363 1648 bp downstream
Tssr34364 transcription start site region 34364 1665 bp downstream
Tssr34365 transcription start site region 34365 1679 bp downstream
Tssr34366 transcription start site region 34366 1739 bp downstream
Tssr34367 transcription start site region 34367 1872 bp downstream
Tssr34368 transcription start site region 34368 1951 bp downstream
Tssr34369 transcription start site region 34369 1976 bp downstream
Tssr34370 transcription start site region 34370 1990 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory