rs236171336 SNP Detail

Summary

• ID
  rs236171336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGTTTAC GTTGTTGTGT TGTTGGTGTG
  TGGGGTTAGG GTACAGGAAG TGCTGCAACT TTAGCCTGGC CAAGTACATT TCTCCAGTTT
  CTTTTTTAAA AAGTAAAAAC ATCATTTGTT GTTTTCCTTT TTCACTTTTT CTTCTTCATT
  Y
  cccccccccc cccccccccG GTAGTGCTGG GATCAGCCCT AGGACTTGAG CACACCAGAC
  AAGTGTTTCA CCCCTGCCTG AGCtatatat atataatata tatatatata tatCCCTAGC
  CCCTTGTGTG TGGATCttgt ttggagatag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444404	CHEV_4_155369187	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236171336					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1241 bp distal
Rr100725	regulatory region 100725	534 bp distal
Rr377473	regulatory region 377473	705 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40749	transcription start site region 40749	1891 bp downstream
Tssr40750	transcription start site region 40750	1782 bp downstream
Tssr40751	transcription start site region 40751	1762 bp downstream
Tssr40752	transcription start site region 40752	1623 bp downstream
Tssr40753	transcription start site region 40753	1261 bp upstream