rs236176464 SNP Detail

Summary

• ID
  rs236176464
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96513209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCGGCCT CCCTCCCTCC
  TCCAGCCGCG CCTCCCTTGT AATTACCACG GGGCTCCCAC CTCGGGCCGC TCCCGTCGTC
  CGCGGCCGCC CGCAGGCCTG CGTCGGAGGG AGGCCGGAAA CTCCGCGCGC CCCCGGCCGC
  GCCCCGGGCT CCCGCGTCCA GGCCGCGCTC CAGGCAGCGC CCCTCGCGCC GCGCCGGTCC
  S
  GTCCGCGCGT GCAGGTCCTC ACCCCGCTCG CTCCGAGGGG GAGCCCCGAC CCGCGCCGGG
  CAGTCGGTCG ACGCGGCGCC TCCCCCCAAC ACACCCCCAT CCAGTCTCAC CAGTCCCGGG
  CGGCCGCCGG TGCCGCCACC CCCGCGCGTG CCCGCCGCCC ACCCTCCGCG CCGCCCCGGG
  GGTCCCCTCA GCCCCGGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378580460	MGP_WTSI_9_96531575	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	C	G	G	G	G	C	G	C	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236176464					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	C	G	G	G	G	C	G	C	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378580460	MGP_WTSI_9_96531575	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96513209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	within coordinates
Rasa2	RAS p21 protein activator 2	within coordinates
Rr684997	regulatory region 684997	451 bp proximal
Tssr86611	transcription start site region 86611	126 bp downstream
Tssr90973	transcription start site region 90973	511 bp upstream
Tssr90974	transcription start site region 90974	256 bp upstream
Tssr90975	transcription start site region 90975	26 bp downstream
Tssr90976	transcription start site region 90976	331 bp downstream