rs236191427 SNP Detail

Summary

• ID
  rs236191427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76902010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGTGATT GGGCTAGAGG
  CTGGATCTCG GCAGCATGTT GTCCCTTCTT CTTCAGGATG GTACCCAGGG CTGTGAGCAC
  GGTGCAACCA TGCTTCTTCA GGTCCTCTGA GCCCTTCATA TCTTCCTCTG ACTTCAAGTT
  CTTGAACTTG TCAAACTTAT CCAGGGTCTC AGGGTGAGTC TTAAACAGAC TGTGGGACAA
  R
  AAGAGATGGA GTGAGACCCG TGGATCTCAG GGCTAGTGTG CAGAGAAGGC AGGCAGCCAT
  TGGATCTATA TGACTCAGAA GTACCCTCTA TTCCTCAAGA CATCTGTGTC AGGGATGCCT
  CTATTGCTTC CTGCCTGAAG ATGCTGAAAC CTGAAGTTTT AGACCTCCTG ACTATCTGTG
  GCTGTTGTTG AGACCCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394626540	MGP_WTSI_15_76848240	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236191427					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394626540	MGP_WTSI_15_76848240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76902010 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	1912 bp downstream
Mb	myoglobin	Intron
Rr504919	regulatory region 504919	867 bp proximal
Rr504920	regulatory region 504920	1095 bp proximal
Tssr131854	transcription start site region 131854	1972 bp downstream
Tssr131855	transcription start site region 131855	1854 bp downstream
Tssr131856	transcription start site region 131856	1774 bp downstream
Tssr131857	transcription start site region 131857	153 bp downstream
Tssr131858	transcription start site region 131858	78 bp downstream
Tssr135064	transcription start site region 135064	1732 bp upstream
Tssr135065	transcription start site region 135065	155 bp upstream