rs236195401 SNP Detail

Summary

• ID
  rs236195401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69299813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACCAAT AGGAGTAAGG
  TTAGCCGGGC ACTGAGCGGC CTCAGGAGGA GGGGCGGCAG GGCCGGTCAG ACAAGCTCAC
  CCTAGGGTGA CCCCGATGTG ACCCCAAGGT TCCCACCTAG GGTCCACATC TCTGATCAGA
  AACTGGTAGC CCTCAGGGCA GTAACAGCAA GCTAAGACTG AGAGTGAGGA AACCATTCAC
  R
  AGCCGACCTG AGGGCAAGCC TCACACATCC ACCGAACTGG CAATGGTCCC CGCCAGACTG
  TTCAAGTTGT CCTCTGCCTA TCCACCCCAA GGACGGACAG CAGACCAAGG CGAAACGCAG
  ACAAAGGCAT CACTAGCTCT CCTTACTTCA CATCACTCAG CGATTGACTC TCCACTCGAT
  CACCCCGGTA GAAATCTCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383783462	MGP_WTSI_11_69222489	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236195401					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383783462	MGP_WTSI_11_69222489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69299813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72933	predicted gene, 72933	767 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	887 bp upstream
Rr402670	regulatory region 402670	91 bp downstream
Rr402671	regulatory region 402671	372 bp upstream
Tssr3543	transcription start site region 3543	263 bp upstream
Tssr102456	transcription start site region 102456	43 bp downstream
Tssr102457	transcription start site region 102457	294 bp upstream
Tssr102458	transcription start site region 102458	687 bp upstream
Tssr102459	transcription start site region 102459	707 bp upstream
Tssr102460	transcription start site region 102460	740 bp upstream
Tssr102461	transcription start site region 102461	783 bp upstream
Tssr102462	transcription start site region 102462	811 bp upstream
Tssr102463	transcription start site region 102463	1564 bp upstream
Tssr102464	transcription start site region 102464	1838 bp upstream
Tssr102465	transcription start site region 102465	1957 bp upstream
Tssr108662	transcription start site region 108662	1367 bp upstream
Tssr108663	transcription start site region 108663	1338 bp upstream
Tssr108664	transcription start site region 108664	1156 bp upstream
Tssr108665	transcription start site region 108665	425 bp upstream
Tssr108666	transcription start site region 108666	159 bp downstream
Tssr108667	transcription start site region 108667	405 bp downstream
Tssr108668	transcription start site region 108668	426 bp downstream
Tssr108669	transcription start site region 108669	441 bp downstream
Tssr108670	transcription start site region 108670	560 bp downstream
Tssr108671	transcription start site region 108671	897 bp downstream
Tssr108672	transcription start site region 108672	1381 bp downstream
Tssr108673	transcription start site region 108673	1409 bp downstream
Tssr108674	transcription start site region 108674	1453 bp downstream
Tssr108675	transcription start site region 108675	1620 bp downstream
Tssr108676	transcription start site region 108676	1665 bp downstream
Tssr108677	transcription start site region 108677	1709 bp downstream
Tssr108678	transcription start site region 108678	1725 bp downstream