rs236199937 SNP Detail

Summary

• ID
  rs236199937
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101212511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGATCTT GATCTTGTTT
  AAGCTCAGAC TTGACTTCAA TTTTTTTCTA AAATAGAGTT TGATTACTGA GTAAAAAACC
  TAGACTTTTA ACATCAAGGC AGCATTATTA AAGGACTTTC TCGTACTTCT CAGTGTGATC
  AATGCTTGAG CCAGCTTAGG CGTGTAGGAG GTGGTGGTGC CCCCCCCCCC CCCCCAGCTG
  K
  GTTAAGTGAT GAGAGTTGGG TAAGGTAAGC GATTGCTTGG AGCATCGCTC TCTTGGTGAG
  GTAGAGGTTG AACAGATGAG TGATCTCCTG ATCCTTCCTG TCCTAGGTCA CTCTCCATGA
  CATGATCCTG AAAAACATTG AGAAGATCAA ACGGCCCCGG AGCAGCAATG CAGAGACACT
  GTACTGAGGC CAGGGCCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384476937	MGP_WTSI_11_101182999	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236199937					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384476937	MGP_WTSI_11_101182999	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101212511 () rs orientation: forward

Symbol	Name	Function Class
Psme3	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	within coordinates
Rr456946	regulatory region 456946	1842 bp proximal
Tssr105078	transcription start site region 105078	948 bp downstream
Tssr105079	transcription start site region 105079	198 bp upstream
Tssr105080	transcription start site region 105080	369 bp upstream
Tssr105081	transcription start site region 105081	487 bp upstream
Tssr105082	transcription start site region 105082	887 bp upstream
Tssr105083	transcription start site region 105083	1161 bp upstream
Tssr105084	transcription start site region 105084	1348 bp upstream