rs236206079 SNP Detail

Summary

• ID
  rs236206079
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48044312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAATCCT TGGCCAGGCT
  TTTAGCTATT GAAGGAACTG GTGGGAGTGG CCCTGGTAGT ATAGCAAAGC AAGAATTTCT
  TCTGAGCCAA AGTCACCTTG AAATCTGGAT TGAACACTGT CTGGACTTTA AGATTGGAGG
  AAAGTAATAA GAAGACGGAG GCCACACAGA TGAGTGACAA GGGACAGCTC TATAGTCTAC
  W
  CTCTCCCTCA TCTTCATATG CTCTCCCACT CCTCTCTGTC CTTAACCCAG CGGAGAGTTT
  GCCTACCCCT GAGCCCATTC TCACAGATTC TGGGCGGTCA CTGACAGGCC ACATGGTCTA
  TAGATCCATA TGTTAAAGTG TACTAGCCAA GGGGGTGGGG GTGGGCAGCA ATTCAATCTC
  CCAGAGAGAT TAGCGGGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353038	MGP_WTSI_17_47870336	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236206079					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353038	MGP_WTSI_17_47870336	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48044312 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5149	transcription start site region 5149	1899 bp downstream
Tssr145026	transcription start site region 145026	1916 bp downstream
Tssr145027	transcription start site region 145027	975 bp downstream
Tssr145028	transcription start site region 145028	934 bp downstream
Tssr145029	transcription start site region 145029	917 bp downstream
Tssr145030	transcription start site region 145030	422 bp downstream
Tssr145031	transcription start site region 145031	414 bp downstream
Tssr145032	transcription start site region 145032	329 bp downstream
Tssr145033	transcription start site region 145033	327 bp downstream
Tssr145034	transcription start site region 145034	316 bp downstream
Tssr145035	transcription start site region 145035	364 bp upstream
Tssr145036	transcription start site region 145036	372 bp upstream
Tssr145037	transcription start site region 145037	416 bp upstream
Tssr145038	transcription start site region 145038	426 bp upstream
Tssr145039	transcription start site region 145039	791 bp upstream
Tssr145040	transcription start site region 145040	815 bp upstream
Tssr145041	transcription start site region 145041	852 bp upstream
Tssr145042	transcription start site region 145042	870 bp upstream
Tssr145043	transcription start site region 145043	925 bp upstream
Tssr145044	transcription start site region 145044	942 bp upstream
Tssr145045	transcription start site region 145045	952 bp upstream
Tssr145046	transcription start site region 145046	971 bp upstream
Tssr145047	transcription start site region 145047	1019 bp upstream
Tssr145048	transcription start site region 145048	1051 bp upstream
Tssr148470	transcription start site region 148470	949 bp upstream
Tssr148471	transcription start site region 148471	927 bp upstream
Tssr148472	transcription start site region 148472	913 bp upstream
Tssr148473	transcription start site region 148473	899 bp upstream
Tssr148474	transcription start site region 148474	881 bp upstream
Tssr148475	transcription start site region 148475	337 bp upstream
Tssr148476	transcription start site region 148476	310 bp upstream
Tssr148477	transcription start site region 148477	277 bp upstream
Tssr148478	transcription start site region 148478	411 bp downstream
Tssr148479	transcription start site region 148479	449 bp downstream
Tssr148480	transcription start site region 148480	927 bp downstream
Tssr148481	transcription start site region 148481	957 bp downstream
Tssr148482	transcription start site region 148482	1088 bp downstream