rs236206293 SNP Detail

Summary

• ID
  rs236206293
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTCCTGT AACATCATGC
  AGCATTGCTT CTCGTGGGTT AGTGAGCACT CCAAGGTTTT AAAACCTTAA AATATAGCAT
  GATTGAATAG TTAAAAAAAA AAAAATCAAA TCTGTGTTCC CCCAAAACAC TAAAAGCTCC
  TCTCTTGGAA ACTGGCTGCC AATGAAGCAA ATTGGAAAGC TGCAGTGAAG AGTAACAGGA
  K
  ACTGATTTCA TCTTTTTCAT AATCCTCCCA CATCCAATGT ATAACTGAAC GCTAACGTGA
  AATCCCCATC AAAATGAACA ACTGTGCATG CTGCATAAAC ACCCAGACTC TGAGACTTAA
  TATATTCCTC AAATTCTGCC CTTTTACTTA CTTCTGAGTT TGTGTACATG CATCAGGTGT
  GTGCATAAGC CCTCAGAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363366051	MGP_WTSI_4_134988089	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	G	G	T	T	T	G	G	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236206293					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	G	G	T	T	T	G	G	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363366051	MGP_WTSI_4_134988089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	997 bp proximal
Gm15979	predicted gene 15979	1333 bp upstream
Gm69862	predicted gene, 69862	1755 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Tssr39615	transcription start site region 39615	1842 bp upstream
Tssr43991	transcription start site region 43991	1570 bp downstream