rs236207373 SNP Detail

Summary

• ID
  rs236207373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148492234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAAACTG TGAATATTCT
  AGAAACTACT GATTGTGCAC TTTAGAAGTT CTTTTTCAAG CTTTAAAGCA AGCGCGCGCG
  CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG ATGTGCGTGT GGCTACCTGC
  AGAGGCCATT TATGGGCATC AGGGTCTCAG GAAATGGATT TATAGGCAGT TGTGTGCCAC
  Y
  GTATGTAGGT GCTGGGAACT AAGTCTAGGC TCTTGGCAAG AGCAGCCAGT GTTCTAACCA
  CTGAGACATT TCTCTAGTCC TAGAAGGGCT TTTTGGCAGT GGTGTTTTGT TATGTTTTGT
  TTTTTGTTTT GTTTTTTTGT TTTCTTGTTT GTTTTTGTTT GTGAGACCGT GTTTCTCTGT
  GTAACCCTGA ATGTCCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321718375	CHEV_5_149367000	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236207373					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148492234 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	1563 bp upstream
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	1499 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	964 bp upstream
Rr625197	regulatory region 625197	1573 bp distal
Rr625198	regulatory region 625198	1269 bp distal
Rr625199	regulatory region 625199	26 bp distal
Rr625200	regulatory region 625200	1110 bp proximal
Tssr54578	transcription start site region 54578	1543 bp upstream
Tssr54579	transcription start site region 54579	1399 bp upstream