rs236216009 SNP Detail

Summary

• ID
  rs236216009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138101571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAATGT TCTTTCTCAC
  CCATTTAAAG AAAATCGGAA AATTGCCCCG AGTGGGGACT TACAGTGGAA ATATGCCAAT
  ATATGATAAA ATGTACAATC TTCAATTCTT CTCTATAATT CTCTTTACAT TATAACAAAA
  ATCATAGAGA GCTCACGACC TGGGAAGTAG TTGGTGCATT GTGACAAGAT TCTGTGGTGC
  Y
  CTGCATTGTT TAAAATCATC TTATGCCAGA TAAACCTCAT CCAAGCAAAT TCGCAACTTA
  CCTAACTGGA TTTTCTTTTG AAAAAAAAAT CCATCTTTCC AATTAAAAAG CAAAACAAAC
  TTATTGTGAT AACATCAACA AACAAGTATC TGAGGCTGCA TTTCTTTTCC AGGCCCTCAG
  ACAACACAGA GCAGACGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351608820	MGP_WTSI_1_140070410	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236216009					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351608820	MGP_WTSI_1_140070410	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138101571 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	1394 bp upstream
Rr419676	regulatory region 419676	699 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	1424 bp proximal
Tssr233	transcription start site region 233	1785 bp downstream
Tssr9150	transcription start site region 9150	1533 bp downstream
Tssr9151	transcription start site region 9151	1518 bp downstream
Tssr9152	transcription start site region 9152	1102 bp downstream
Tssr9153	transcription start site region 9153	614 bp upstream
Tssr9154	transcription start site region 9154	1795 bp upstream
Tssr9155	transcription start site region 9155	1858 bp upstream
Tssr14017	transcription start site region 14017	1667 bp upstream
Tssr14018	transcription start site region 14018	449 bp downstream
Tssr14019	transcription start site region 14019	478 bp downstream
Tssr14020	transcription start site region 14020	510 bp downstream
Tssr14021	transcription start site region 14021	1348 bp downstream
Tssr14022	transcription start site region 14022	1405 bp downstream
Tssr14023	transcription start site region 14023	1450 bp downstream
Tssr14024	transcription start site region 14024	1793 bp downstream
Tssr14025	transcription start site region 14025	1820 bp downstream
Tssr14026	transcription start site region 14026	1838 bp downstream
Tssr14027	transcription start site region 14027	1859 bp downstream
Tssr14028	transcription start site region 14028	1885 bp downstream
Tssr14029	transcription start site region 14029	1909 bp downstream