rs236223239 SNP Detail

Summary

• ID
  rs236223239
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144991865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG AGAGTAGGTC ACGCTTTACT
  M
  TTGCTACGCA GAGGACGTGT ACAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322067420	CHEV_6_144994659	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236223239					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144991865 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1974 bp proximal
Gm15687	predicted gene 15687	1398 bp upstream
Gm26666	predicted gene, 26666	1420 bp upstream
Rr641039	regulatory region 641039	472 bp distal
Rr641040	regulatory region 641040	908 bp proximal
Tssr64030	transcription start site region 64030	1366 bp downstream
Tssr64031	transcription start site region 64031	1391 bp downstream
Tssr64032	transcription start site region 64032	1466 bp downstream
Tssr64033	transcription start site region 64033	1497 bp downstream
Tssr64034	transcription start site region 64034	1525 bp downstream
Tssr64035	transcription start site region 64035	1586 bp downstream