rs236232226 SNP Detail

Summary

• ID
  rs236232226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95253174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCCAAT GCCTATTAAG
  CCACCAGTAC CTGCCCCTGT GTCTGCAACA GCTGAGCACC TCGGTCCCGC GAATAGCAGC
  CCCTCTTCTC CCCAGCCCTC CACGTAGGAG GGAACCTTTA GGCCAGCCAT CCACCCCGCT
  GTGCGCCTGC CAGACGCGAC CCTCCTCTCC TCCATGTGGG ATGCAGGACC AGCGTGCGGG
  R
  AGGGGGCGGG GCTCAGATGT CCGTCCCTCC CTCTCTAAGA CACACACAGA GCTAGAGCTA
  GCACGCCACT GCCCAGGTCG ACTACCACTC CCGGGCACCT CGGGAAGCGA ACCAGAGACT
  GTCCCCTCCG CCAGCATCCT AGAAGGCCAG GAAAGAGACG AGCTGAGCGC CTCCTTAAAG
  CTGCGCAGAC TGCCCTCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381349751	MGP_WTSI_10_94879946	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236232226					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381349751	MGP_WTSI_10_94879946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95253174 () rs orientation: forward

Symbol	Name	Function Class
5730420D15Rik	RIKEN cDNA 5730420D15 gene	63 bp upstream
Cpgi2139	CpG island 2139	within coordinates
Rr225467	regulatory region 225467	within coordinates
Rr385140	regulatory region 385140	87 bp downstream
Socs2	suppressor of cytokine signaling 2	132 bp upstream
Tssr95358	transcription start site region 95358	1685 bp downstream
Tssr95359	transcription start site region 95359	319 bp downstream
Tssr95360	transcription start site region 95360	45 bp downstream
Tssr95361	transcription start site region 95361	40 bp upstream
Tssr95362	transcription start site region 95362	1370 bp upstream
Tssr99033	transcription start site region 99033	1829 bp upstream
Tssr99034	transcription start site region 99034	1801 bp upstream
Tssr99035	transcription start site region 99035	1306 bp upstream
Tssr99036	transcription start site region 99036	1277 bp upstream
Tssr99037	transcription start site region 99037	580 bp upstream
Tssr99038	transcription start site region 99038	478 bp upstream
Tssr99039	transcription start site region 99039	451 bp upstream
Tssr99040	transcription start site region 99040	235 bp upstream
Tssr99041	transcription start site region 99041	202 bp upstream
Tssr99042	transcription start site region 99042	43 bp upstream