rs236233069 SNP Detail

Summary

• ID
  rs236233069
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131564286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTGGTG AAGGCTCAAT
  GTCCCAGTGT AGGGGAATGT GAGGGCAGGG AGGCAGGAGT GGATAGGTGG GTGGAGGTAC
  ACTCTCATAG AAGCAGGAGG AGAGAATGGG ATAGGGGGCT TCTGGGGGGG ATAGGGAAAG
  GGGATAACAT TTGAAATGTA AATAAAATAT CCAATAAAAA AAAAGAAAAA TGTCTGGATC
  M
  TATAGCAAAG AGACTCTGAG GCTTTCTAGC CCCTGGGCTA GAAAGTTTAA GGTTGGGGAT
  AGGGTATGCC AGGTAGGATT TGAGGAATGC TGGGAGAACC TGGGGGCCAG GTCTGCTTTG
  GTAAAATATG TACCTTGGCT GTTTGTTCCA GAGTAAGAAA TCAAACACTG TAAAGGAAGC
  ACTATTGGAT CAGAGAGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351454697	MGP_WTSI_1_133533125	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236233069					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351454697	MGP_WTSI_1_133533125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131564286 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	1766 bp upstream
Rr12195	regulatory region 12195	915 bp proximal
Rr28482	regulatory region 28482	1314 bp proximal
Rr35674	regulatory region 35674	1677 bp distal
Rr366988	regulatory region 366988	1666 bp upstream
Tssr8635	transcription start site region 8635	1722 bp upstream
Tssr8636	transcription start site region 8636	1758 bp upstream
Tssr8637	transcription start site region 8637	1806 bp upstream
Tssr8638	transcription start site region 8638	1840 bp upstream
Tssr8639	transcription start site region 8639	1892 bp upstream
Tssr8640	transcription start site region 8640	1937 bp upstream