rs236235759 SNP Detail

Summary

• ID
  rs236235759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44382547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTGTGA GAAAGCACCC
  AGGGGCTTCC TGTCCCCTGA AGGCAGGACA TTCCAGGAAG AGGAGTGAGC ATGACTTCCC
  AGGGCTGGGG TAACAGTTCT TCATGTACCT GTGTGCTGCG TCCATGTGGC CACCATGTGA
  CAGTGGAGAC CTGGCCTGTC CCCTACCTAG CAGTCAGCTG ATGCTGTGTT TGACTCAATG
  Y
  TAGATTCTTG GTTCCCTGCT GCCAGAGTGT AACCTCAAGT TACCCTCAGG AAGGGTAGGC
  GGGTTACTGG GGTATGACTC AGCCCTTGTC ATTTCTAAAT TTGTTTTCTC TTAATCTCAA
  TTCTGTCTGT AATCCCAACA AAAAAGTAAG TGCATTGCTG AGACTTCCAG GCCAGCTAAG
  GCTCTGCTGT GAGCGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552058	MGP_WTSI_19_44468598	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236235759					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552058	MGP_WTSI_19_44468598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44382547 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	within coordinates
Rr548237	regulatory region 548237	554 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	342 bp downstream
Tssr159446	transcription start site region 159446	474 bp downstream
Tssr159447	transcription start site region 159447	651 bp downstream
Tssr159448	transcription start site region 159448	683 bp downstream
Tssr159449	transcription start site region 159449	735 bp downstream
Tssr159450	transcription start site region 159450	762 bp downstream
Tssr159451	transcription start site region 159451	834 bp downstream
Tssr159452	transcription start site region 159452	1124 bp downstream
Tssr159453	transcription start site region 159453	1183 bp downstream
Tssr159454	transcription start site region 159454	1215 bp downstream
Tssr159455	transcription start site region 159455	1508 bp downstream
Tssr159456	transcription start site region 159456	1630 bp downstream
Tssr159457	transcription start site region 159457	1674 bp downstream
Tssr159458	transcription start site region 159458	1704 bp downstream
Tssr159459	transcription start site region 159459	1794 bp downstream
Tssr159460	transcription start site region 159460	1831 bp downstream
Tssr159461	transcription start site region 159461	1890 bp downstream
Tssr159462	transcription start site region 159462	1918 bp downstream
Tssr159463	transcription start site region 159463	1964 bp downstream
Tssr159464	transcription start site region 159464	1987 bp downstream