rs236237597 SNP Detail

Summary

• ID
  rs236237597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28981643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCCCGC ACCTGGCTCT
  GCGGCCTGCA CCTGGCACCG CCCCCGGCTC CTGGGAGGAG GCGTGGTTGG CATTGACCCC
  GCCCCAGCCG GACCTTGCGG GAGGCGTGGG TCTGTTGGCC ACGACGTCCT TGCGCCTTCG
  TGCTTGCGCT GTGACTATGG CGAGAGAAAC TTTTCGGAAA CCTGTGGCTG TCTGCCCGCT
  Y
  TGCTTTAGCG TTCCTTTAGG TGTGAGAGAT ATATCCTGCC TAAATTCCTC GTTCTCTGTG
  CCATAAACAA ATGTCCCGGA TTGAGCAGTG GCCAGGCCAG CTTGGCCTGT GTGTCGTCAA
  ACAGGATCAG CCCGTAGTAG TGATGCGGAA GCAGAGGGAA GAGTGATCAG GAATGTGATG
  GTGAAATCCT ACAGTTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370878697	MGP_WTSI_7_30067237	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236237597					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370878697	MGP_WTSI_7_30067237	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28981643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18754	CpG island 18754	within coordinates
Gm45977	predicted gene, 45977	1729 bp downstream
Gm73729	predicted gene, 73729	1333 bp downstream
Rr155861	regulatory region 155861	958 bp proximal
Rr167412	regulatory region 167412	within coordinates
Spint2	serine protease inhibitor, Kunitz type 2	306 bp upstream
Tssr2177	transcription start site region 2177	623 bp upstream
Tssr2178	transcription start site region 2178	434 bp upstream
Tssr2179	transcription start site region 2179	326 bp upstream
Tssr2180	transcription start site region 2180	314 bp upstream
Tssr71645	transcription start site region 71645	530 bp upstream
Tssr71646	transcription start site region 71646	283 bp upstream
Tssr71647	transcription start site region 71647	245 bp upstream
Tssr71648	transcription start site region 71648	228 bp upstream
Tssr71649	transcription start site region 71649	178 bp upstream