GGTTGTGGCT ATCTCTGCGC TCTTAAACAA ATGATCCTTT TCAGAGATCG GTATATAAGA TGGAAAAGAA TGACCCCATC TTCTAATGAG CCTCAAGAAC CCTGGCAGCA TCAGCAGACT AAAGGCCGAG GGTTGGCCAT CACATGTAAG CTATTCACTG GTGTGGTGGC AGTTGGTCTC TGTCTCCCAT CACCCCCCAC R TCACCCTTGC TATACTCCCC TATACTTCCC ACTATATCCT CCCCACTACA CCCCTGCTAT ATCCCCCCTG TCATCCTCCC CACCATACCC CTTGCCATAC CCCCCACCAT ACTTCCCCTA TGGCCCCCAT ACTCTCTGCT ATACCCCCAC TATACCCTCC CTGCTATACC CCCACTATAC CCCCGCTATG TCCCCCACTA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss373453201 | MGP_WTSI_7_149765382 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A | A | A | A | G | A | A | A | A | A | A | G | A | A | A | A | A | A | A | G | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs236267495 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A | A | A | A | G | A | A | A | A | A | A | G | A | A | A | A | A | A | A | G | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss373453201 | MGP_WTSI_7_149765382 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr7:142133214 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi19965 | CpG island 19965 | 835 bp proximal | ||||||
Gm56421 | predicted gene, 56421 | 1559 bp downstream | ||||||
H19 | H19, imprinted maternally expressed transcript | 1331 bp upstream | ||||||
Rr27 | regulatory region 27 | 671 bp proximal | ||||||
Rr370601 | regulatory region 370601 | 771 bp upstream | ||||||
Rr658231 | regulatory region 658231 | 842 bp distal | ||||||
Rr658232 | regulatory region 658232 | 197 bp distal | ||||||
Rr658233 | regulatory region 658233 | 393 bp proximal | ||||||
Rr658234 | regulatory region 658234 | 733 bp proximal | ||||||
Rr658235 | regulatory region 658235 | 829 bp proximal | ||||||
Tssr2461 | transcription start site region 2461 | 1551 bp downstream | ||||||
Tssr70220 | transcription start site region 70220 | 1920 bp downstream | ||||||
Tssr70221 | transcription start site region 70221 | 1881 bp downstream | ||||||
Tssr70222 | transcription start site region 70222 | 1823 bp downstream | ||||||
Tssr70223 | transcription start site region 70223 | 1681 bp downstream | ||||||
Tssr70224 | transcription start site region 70224 | 1636 bp downstream | ||||||
Tssr70225 | transcription start site region 70225 | 1598 bp downstream | ||||||
Tssr70226 | transcription start site region 70226 | 1503 bp downstream | ||||||
Tssr70227 | transcription start site region 70227 | 1421 bp downstream | ||||||
Tssr70228 | transcription start site region 70228 | 1408 bp downstream | ||||||
Tssr75832 | transcription start site region 75832 | 1985 bp upstream | ||||||
Tssr75833 | transcription start site region 75833 | 1908 bp upstream | ||||||
Tssr75834 | transcription start site region 75834 | 1634 bp upstream | ||||||
Tssr75835 | transcription start site region 75835 | 1602 bp upstream | ||||||
Tssr75836 | transcription start site region 75836 | 1580 bp upstream | ||||||
Tssr75837 | transcription start site region 75837 | 1557 bp upstream | ||||||
Tssr75838 | transcription start site region 75838 | 1487 bp upstream | ||||||
Tssr75839 | transcription start site region 75839 | 1465 bp upstream | ||||||
Tssr75840 | transcription start site region 75840 | 1436 bp upstream | ||||||
Tssr75841 | transcription start site region 75841 | 1409 bp upstream | ||||||
Tssr75842 | transcription start site region 75842 | 1392 bp upstream | ||||||
Tssr75843 | transcription start site region 75843 | 1386 bp upstream | ||||||
Tssr75844 | transcription start site region 75844 | 1356 bp upstream | ||||||
Tssr75845 | transcription start site region 75845 | 1323 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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