rs236292291 SNP Detail

Summary

• ID
  rs236292291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69017728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCACCAG ATGGGCCATG
  ATCTGAAAAT ATTTGCTCCA TAGCCATTCC CAGAAAAAAA CACAGAACAC CTATTCCAAA
  GAAACATGCA TCTTTCTATG TGGCTAAGGG TTTTCTTTAT GAGCCCTGAT AACAAAGTTA
  CTGTCCAGCA ACTGGCAAGA CCCAGAATTG TTGTAAAGAG GCATTGCCAT TCTGAAAGTA
  Y
  GGTATGGAAC ATGGCAACCT AGTCATTAGA CAGGTACATT ATGAAGGAAA TGGGTACCCT
  TGTGAGTTGT TAAGCTTGGG TGGAGCCTCT CAGAGAACAA CATGCTCCTG TCTGCAAGTA
  TAATTGAGTA TCATTAATAG TGTCAGGGAT TGGTACTTGC CCATGGGATG TGTCTCAAGT
  TGGGCACCCT CCCCCATATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss388935358	MGP_WTSI_13_69008487	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs236292291					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388935358	MGP_WTSI_13_69008487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69017728 () rs orientation: forward

Symbol	Name	Function Class
Adcy2	adenylate cyclase 2	within coordinates
Gm60580	predicted gene, 60580	1598 bp upstream
Rr277015	regulatory region 277015	928 bp distal
Rr280122	regulatory region 280122	646 bp proximal