rs236292749 SNP Detail

Summary

• ID
  rs236292749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90649236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAAAAAT GAGCAAAATA
  AAAAGGGAAA GATAGGTAAA AACAGAAGAG TGATGAGGCG AGATATCTCA TTGACCCTGA
  TCCTCCTTTT CATCTCGCCA TTGATTTCTT CTCCCACTTC CTTTCCGGGC TCTAAGTTCC
  TACCTTAGAG GATAAACCTT TGAGATTTAT ATTACATATT ATTATATTGT ATTATATTAT
  R
  TATTATATTA TTTACTTTAC CCATTGCAGG AAAAAGTCAT GACATATATA TGTTCTCAAC
  AAAATATTCT GTCAAGCAAA ATAGCAGAGT GCTGCAAATT ACCCATGATC CAACTAGGCT
  TCTGCATAAT TCACGCAGAG AATGGCGTCA AACCTGAAGG CTTATCTCTA AATCCAAGCC
  AGTTTTTGGG AGACAGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss365837375	MGP_WTSI_5_90930403	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236292749					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365837375	MGP_WTSI_5_90930403	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90649236 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47136	transcription start site region 47136	1736 bp downstream
Tssr47137	transcription start site region 47137	1674 bp downstream
Tssr47138	transcription start site region 47138	973 bp downstream
Tssr47139	transcription start site region 47139	24 bp upstream
Tssr47140	transcription start site region 47140	53 bp upstream
Tssr47141	transcription start site region 47141	67 bp upstream
Tssr47142	transcription start site region 47142	155 bp upstream
Tssr51784	transcription start site region 51784	142 bp downstream