rs236303219 SNP Detail

Summary

• ID
  rs236303219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115149070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTGACC TCCAAGATGT
  TTAAAAGGGG TCAGGTGGGG GATGTGCATC CACACATGAC TGAGGACAGT GAGCCACTAA
  CTAGCTAGGG TTCCTGTCCT GCATCGTTCT TTTAATGTTT CATGAACACT TTGAAGAGGT
  GTCTTGAAAA CAAAGCACTC TAAAGAATAC TTTAAACACA GAACTACGGT AAAGTGCTTG
  R
  AACACAAAGC ACTTTAAAAG GATAAGTAGT TTGTGAAGGA TTTTCTCTCC CACCTCTGAT
  GCAGCATCTG CTTACAGATG ATACAAACTT CTCTGGGGGG GGAGGGTGAG AACGAGGTGG
  GGAACTGCTA CCCCCCCCCC CCCAAGGAAG GAATCCCAGT GCAGTTTCCT TGTGTTAGTT
  AAAACCTTGG CTTCTGTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484090	CHEV_10_114750221	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236303219					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115149070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	1649 bp proximal
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr439191	regulatory region 439191	1073 bp distal
Rr439192	regulatory region 439192	within coordinates
Tssr95806	transcription start site region 95806	1866 bp upstream
Tssr95807	transcription start site region 95807	1918 bp upstream
Tssr99318	transcription start site region 99318	1710 bp downstream
Tssr99319	transcription start site region 99319	1744 bp downstream