rs236319557 SNP Detail

Summary

• ID
  rs236319557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67143680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGACATAG AAAACGATAA
  ACAGCAGCTC GATGAGAAAC TCAAAAAGTA AGCGTTATAG GATTCAGCCC TGACTTCTCA
  CTGTGTGGGT GCAGGGGAAA CACGGGTTTG AGTGTTTCCA AATGATTGCT TCATCATATT
  TGGGGTGAAA TAAACAAGGG CCAGCTTTAA AAATATTTAA TTAAAATGGC ACTGGGTAGA
  Y
  TTGTAAAACA TGTGTTTCTC TCTATTTTAA GGCAATCAGT ATAAAAAGTT CAATTATGCA
  TAGGTAGGAA GGCTGGGGGA AGAATTAACC ATGAGCTAAT GTGCTGCTGT TAAACTAGGA
  AAGAGTTTGA AATGAGCAAT CTGCAGAGCA AGATTGAGGA CGAGCAGGCC CTCGGCATGC
  AGCTGCAGAA GAAGATCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730833	MGP_WTSI_11_67066356	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	C	T	T	C	T	C	C	T	T	T	C	T	T	T	C	T	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236319557					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	C	T	T	C	T	C	C	T	T	T	C	T	T	T	C	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730833	MGP_WTSI_11_67066356	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67143680 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3527	transcription start site region 3527	1977 bp upstream
Tssr3528	transcription start site region 3528	1879 bp upstream
Tssr3529	transcription start site region 3529	1935 bp upstream
Tssr102196	transcription start site region 102196	1978 bp downstream
Tssr102197	transcription start site region 102197	1934 bp downstream
Tssr102198	transcription start site region 102198	1873 bp downstream
Tssr102199	transcription start site region 102199	1119 bp downstream
Tssr102200	transcription start site region 102200	968 bp downstream
Tssr102201	transcription start site region 102201	621 bp upstream
Tssr102202	transcription start site region 102202	1143 bp upstream
Tssr102203	transcription start site region 102203	1203 bp upstream
Tssr102204	transcription start site region 102204	1601 bp upstream
Tssr102205	transcription start site region 102205	1819 bp upstream
Tssr102206	transcription start site region 102206	1923 bp upstream
Tssr108529	transcription start site region 108529	1896 bp upstream
Tssr108530	transcription start site region 108530	1894 bp upstream
Tssr108531	transcription start site region 108531	1866 bp upstream
Tssr108532	transcription start site region 108532	1096 bp upstream
Tssr108533	transcription start site region 108533	944 bp upstream
Tssr108534	transcription start site region 108534	250 bp upstream
Tssr108535	transcription start site region 108535	144 bp upstream
Tssr108536	transcription start site region 108536	1190 bp downstream
Tssr108537	transcription start site region 108537	1202 bp downstream
Tssr108538	transcription start site region 108538	1704 bp downstream
Tssr108539	transcription start site region 108539	1912 bp downstream
Tssr108540	transcription start site region 108540	1972 bp downstream