rs236333010 SNP Detail

Summary

• ID
  rs236333010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104127787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTATCGG TACGCGCGCA
  CCGAGCTTAG TCGCTCGCTG GAGCGCGGCT GCTGCGGAGC CGGAGCGCCG AGACCAACGC
  CTGCCCCAGC TGCCAGGAAA CTGGCGCTTT CAAACCCGCC GCAACCTCCT CCCCGCTCGG
  CCCCTCCCCC GCCCTCGCCG GCCCGGCCCC GCCCCCTCCC GCAGCGCAGC GCCCGGCGCG
  Y
  TGCCGTCACC AGCTCTGCTC CGGAGGACCC GCCCAGTTCT CGGCTCCGCA CCGTGGATTG
  GGTTCTGGCA GCTGGGGGCG GCCCTCGGCG GGCATGCTGA TTTCTGATTG GGTGGTCTAA
  GTAGAGGAGG CGGGCACTAG AATGACTGAA GTTTAGAGAG GGAGGAAAAA AGAAGTTTAG
  AGTGTGAGGG AGGGAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320859622	CHEV_3_104024394	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236333010					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104127787 () rs orientation: forward

Symbol	Name	Function Class
2010002M09Rik	RIKEN cDNA 2010002M09 gene	132 bp upstream
Cpgi13643	CpG island 13643	within coordinates
Gm66179	predicted gene, 66179	within coordinates
Magi3	membrane associated guanylate kinase, WW and PDZ domain containing 3	97 bp upstream
Rr397911	regulatory region 397911	within coordinates
Rr582475	regulatory region 582475	802 bp distal
Rr582476	regulatory region 582476	within coordinates
Rr582477	regulatory region 582477	143 bp proximal
Tssr31043	transcription start site region 31043	400 bp upstream
Tssr34876	transcription start site region 34876	114 bp upstream
Tssr34877	transcription start site region 34877	93 bp upstream