CGACGCGCCC GTATTTCTCG AAGACGCGCC TCAGGGTGTC GGGCGAGGTG CGGTAGGTCA GGTTGTCCAC CTTGAGGGAG GTCATGCCCT CCACATCGGG AGGCGGGCGG CCGTAGCTCA TGGCTGCGAA GCGGCGCCGA GACCCTAACG CCCCGGACAG GCCCTCGCTC TCCGGAAACG CAGCTCCGTC AGGCGCTCGG Y AGCTACAGTC CTCGTGGGTA GGGAGGGAGC CGCAAGGCCG CCGCAGAGCA CCCGAACCTG ACGGACGCCT GAGCAGCAAC TAAGCGAGCG GGCGGGCCCC AGCGCGCATT TATACCCACC CTTACAAAAT GGCGCCCGCG CCACCCGGAA ATGAATCTCC TGATTGGCCC ATTCGGCCGT GTTGCGTAAC GTCGCCGCCG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss384861313 | MGP_WTSI_11_116714323 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs236334738 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss384861313 | MGP_WTSI_11_116714323 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr11:116743835 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi4197 | CpG island 4197 | within coordinates | ||||||
Mfsd11 | major facilitator superfamily domain containing 11 | within coordinates | ||||||
Rr246191 | regulatory region 246191 | within coordinates | ||||||
Rr403146 | regulatory region 403146 | within coordinates | ||||||
Rr403147 | regulatory region 403147 | 537 bp upstream | ||||||
Srsf2 | serine and arginine-rich splicing factor 2 | within coordinates | ||||||
Tssr106000 | transcription start site region 106000 | 789 bp downstream | ||||||
Tssr106001 | transcription start site region 106001 | 435 bp downstream | ||||||
Tssr106002 | transcription start site region 106002 | 245 bp upstream | ||||||
Tssr106003 | transcription start site region 106003 | 448 bp upstream | ||||||
Tssr106004 | transcription start site region 106004 | 743 bp upstream | ||||||
Tssr112001 | transcription start site region 112001 | 1815 bp upstream | ||||||
Tssr112002 | transcription start site region 112002 | 1738 bp upstream | ||||||
Tssr112003 | transcription start site region 112003 | 1694 bp upstream | ||||||
Tssr112004 | transcription start site region 112004 | 1534 bp upstream | ||||||
Tssr112005 | transcription start site region 112005 | 856 bp upstream | ||||||
Tssr112006 | transcription start site region 112006 | 817 bp upstream | ||||||
Tssr112007 | transcription start site region 112007 | 751 bp upstream | ||||||
Tssr112008 | transcription start site region 112008 | 645 bp upstream | ||||||
Tssr112009 | transcription start site region 112009 | 553 bp upstream | ||||||
Tssr112010 | transcription start site region 112010 | 74 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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