rs236350975 SNP Detail

Summary

• ID
  rs236350975
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23704445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTTTT AAAATTTCAG
  TTTTTCCTTC CTTTTCTTCA AAGTTACTCA AAGTGAAATT GTTAGCATGG ACTCTGTCTT
  GGAAAGGTTT GGGGTGCAGT GGTGCAGTGT GCTTATCTTA GGGTTCCTCT TGTTTGGGAC
  ATCCCCCAAG CCCCTACACT CACGTGTTGA CATTATTTAG AAGATTAGCT GTCTATTGAA
  W
  GTGCAAGCGG GACTTTCAGT ACTTACCTAG CTGAAGGCAC TCAGGATATA CCACATCTAG
  CACTTGGATT TCAAGCCTCA GATCTGTCTC TGTTTGGTGT CTTGGCTTTT CATTTTTGCC
  CAAACTAGGA ATATACCCAG CATGCATAGA TACACACACC TTTAGACTTA CACTCTCTCT
  TCTCAAATCC TACCTCCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387984168	MGP_WTSI_13_23612144	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236350975					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387984168	MGP_WTSI_13_23612144	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23704445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5357	CpG island 5357	1986 bp distal
Gm61424	predicted gene, 61424	within coordinates
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	1154 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	591 bp downstream
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	1595 bp upstream
Rr281116	regulatory region 281116	44 bp distal
Rr281117	regulatory region 281117	1155 bp proximal
Rr403643	regulatory region 403643	1912 bp downstream
Rr403644	regulatory region 403644	1048 bp downstream
Rr403645	regulatory region 403645	475 bp downstream