rs236352500 SNP Detail

Summary

• ID
  rs236352500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112687121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCAGGG GCCTCAGTCA
  GAACCCAGGA CACCATTCCT TCATCTCCCG TCCTTCACCT TGGAAGGAGC CACAACCCAG
  GTAAAAGTCT CAAATAGAAA AAAAAAATAA TAACGTTTAT AAGCATCCAT TACTAAGGAG
  TGAGCAAGGG GTAGCTAAGC TAAGACAGCG AAGCCGCTGG GGAAAGGGCT GTTTACAGAG
  Y
  CAAGAGAATG GGAGAGCCCG GCTCGGGAGT TGGGACTCAG AAACAGGACA GTCTCAGTCT
  ACTAGGAAGA AACTGCAAAA TCCCCATACA GCTCCCGGAA GCTGAGACCG GGGCTAACAA
  CCCTGGCAAG GACAAATGGG CTAGGAAGAC AGGAACGTAC CCAGCCCTCC TCTTTCCAGT
  ACCTGACAAG TCTCCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170486	CHEV_12_113958898	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236352500					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112687121 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	829 bp upstream
Cpgi5179	CpG island 5179	573 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	within coordinates
Rr473584	regulatory region 473584	1006 bp proximal
Rr473585	regulatory region 473585	1340 bp proximal
Rr473586	regulatory region 473586	1518 bp proximal
Tssr115398	transcription start site region 115398	1431 bp downstream
Tssr115399	transcription start site region 115399	418 bp upstream
Tssr115400	transcription start site region 115400	817 bp upstream
Tssr115401	transcription start site region 115401	1142 bp upstream
Tssr115402	transcription start site region 115402	1476 bp upstream
Tssr115403	transcription start site region 115403	1823 bp upstream
Tssr117886	transcription start site region 117886	1005 bp downstream
Tssr117887	transcription start site region 117887	1043 bp downstream
Tssr117888	transcription start site region 117888	1073 bp downstream