rs236357926 SNP Detail

Summary

• ID
  rs236357926
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101029129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTTCAC ACATTTTAGA
  ATGATCAATT ATTGAAAACT GAACCCTAAA TGGGTATCTA TATCACCTCC TCTTGTAGAA
  CAAGGTAGAA GAAGGGCAAA AAGAATGTGC GAAGGAGGAA GGGGTGGAGT GTTAGAGAGC
  CTTTTCCTGG CACACCACGG CTCCTGCACT CTTGAACTCT CAGTGATTGT GATATCAGGA
  K
  AAGACTGGGC CGGTTAACAT TTTATCATGG AGGGGAGGAA GGGATTAGGA GGCTTCCATC
  CCTCCTGATG AGGTTAATAC AGTTAATAGC TGCTGGGGGA GGAAGAGACA TTGTCTTTAG
  TGGTATAGCT GCTAGGATGG ATCTTGTGTT CCTATGAGCA ATCCTAATTA AAATCATTTG
  GTCATCAAAA AAAAAAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229019	CHEV_4_100844537	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236357926					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101029129 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Tssr42542	transcription start site region 42542	184 bp downstream