rs236380050 SNP Detail

Summary

• ID
  rs236380050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45202763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA GGGTTAAGAA TTAATAGTTC
  R
  CGATGTCTTC AGAACAAAGC GATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325166162	CHEV_16_45382513	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236380050					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45202763 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr4884	transcription start site region 4884	290 bp downstream
Tssr4885	transcription start site region 4885	327 bp downstream
Tssr4886	transcription start site region 4886	659 bp downstream
Tssr141220	transcription start site region 141220	199 bp downstream
Tssr141221	transcription start site region 141221	222 bp downstream
Tssr141222	transcription start site region 141222	343 bp downstream
Tssr141223	transcription start site region 141223	356 bp downstream
Tssr141224	transcription start site region 141224	375 bp downstream
Tssr141225	transcription start site region 141225	399 bp downstream
Tssr141226	transcription start site region 141226	451 bp downstream
Tssr141227	transcription start site region 141227	505 bp downstream
Tssr141228	transcription start site region 141228	547 bp downstream
Tssr141229	transcription start site region 141229	563 bp downstream
Tssr141230	transcription start site region 141230	716 bp downstream
Tssr141231	transcription start site region 141231	810 bp downstream
Tssr141232	transcription start site region 141232	862 bp downstream