rs236380063 SNP Detail

Summary

• ID
  rs236380063
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53615749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGATACTA TGTAATTACC
  AACTCCTCCT GAAAGGGAAA CCACAAAGAA AGACAGTGTG CAGACTTTTT AAAAGGAAGA
  TTCTCAGCAG GAGGGTGATG GCAAGCAAAA GGCTGGGCAC TTCTTGAGCT GTGTGGATTT
  CTGGGTTCTG AGCTCACCTG CTGTGTGATT TGGGCAGTGC AAAGAGAGGC AGACAGAGAG
  C
  TCTGTGCAAT TCTTAGGAGG AATTTTCTAT AGTGAGGGGG CAAGGAGAGG GAGAGAGGAG
  ACCATGATTT CTGTGAGTTT AACAGTGAGG GGGCTGGACG GGAATGGACA GCAGCTACAG
  GTCCTCTAAC ATTAGGCAGG GGACCTAGGG CTTCAGTCAC GGGGCTAGAT CTTCCCAGCT
  CAGTTCGTGC CTCGGCCTCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324342368	CHEV_13_53557082	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236380063					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53615749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	190 bp proximal
Gm33763	predicted gene, 33763	356 bp upstream
Rr388456	regulatory region 388456	within coordinates
Rr406701	regulatory region 406701	1491 bp proximal
Rr480050	regulatory region 480050	within coordinates
Rr480051	regulatory region 480051	316 bp proximal
Rr480052	regulatory region 480052	409 bp proximal