rs236394590 SNP Detail

Summary

• ID
  rs236394590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79832541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCTCCA CTTAAAGGGG
  CCGCGCTCCC CCGCCGAGGC CGAGAGGAGC GAAAGTGGAT GGAGTTTGGG GGCCTCAGAA
  CGGTGAGAAA ATCCCCGAGA GGGTGGAAGG TGGAGCCTGG AGATCTGGGG ATGCTGTGGG
  GTGAGGGTGG GCTGAGCCAC GTTCCCTGAT AATTTGGGGT TCCAGGTGCC TACTCTCCCT
  Y
  GCCCTTCCTT ATCCTTCCGG GGAGTGTGGG AAAAATGGAC CACCGATCCT CACAGCGGTC
  ATCTGGTCAC CTCGAGGGAC CTCTGCCAAC CTACACCTCC AGTGTCCCAC TTTCCAAATG
  AGGCCTGTCA CCCCCCACCC CCCAGATCTC AAATTTCACT TTATGAAAGA AAAAAGTCCC
  CGAGTGGAAG CCGCCAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381012826	MGP_WTSI_10_79459452	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236394590					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381012826	MGP_WTSI_10_79459452	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79832541 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	within coordinates
Cnn2	calponin 2	1307 bp downstream
Cpgi1834	CpG island 1834	within coordinates
Cpgi1835	CpG island 1835	516 bp proximal
Rr225140	regulatory region 225140	within coordinates
Rr402033	regulatory region 402033	119 bp downstream
Tssr94446	transcription start site region 94446	1849 bp downstream
Tssr94447	transcription start site region 94447	1672 bp downstream
Tssr94448	transcription start site region 94448	1617 bp downstream
Tssr94449	transcription start site region 94449	1405 bp downstream
Tssr94450	transcription start site region 94450	232 bp downstream
Tssr94451	transcription start site region 94451	202 bp downstream
Tssr94452	transcription start site region 94452	183 bp downstream
Tssr94453	transcription start site region 94453	156 bp downstream
Tssr94454	transcription start site region 94454	756 bp upstream
Tssr98373	transcription start site region 98373	1359 bp upstream
Tssr98374	transcription start site region 98374	1305 bp upstream