rs236395540 SNP Detail

Summary

• ID
  rs236395540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:113365584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGA GGATGAGGCT GTCTCCCGTG
  Y
  CCCTGAGGCT TAGCCGGGGT CCGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322424333	CHEV_7_120909861	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236395540					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113365584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	within coordinates
Rr653859	regulatory region 653859	163 bp distal
Rr653860	regulatory region 653860	1342 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	Coding-NonSynonymous
Tssr68625	transcription start site region 68625	552 bp downstream
Tssr68626	transcription start site region 68626	500 bp downstream
Tssr68627	transcription start site region 68627	436 bp downstream
Tssr68628	transcription start site region 68628	308 bp downstream
Tssr68629	transcription start site region 68629	284 bp downstream
Tssr68630	transcription start site region 68630	249 bp downstream
Tssr68631	transcription start site region 68631	148 bp downstream
Tssr68632	transcription start site region 68632	92 bp downstream