rs236405722 SNP Detail

Summary

• ID
  rs236405722
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33598656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAACCCC TGAAAGACTG
  GTCAAAGGGA CTTCACAGGA GATCTTTGCC ATCTTTCCCC CACTCACTAC CAAACCAAAG
  ATTACCAGAA ATCCATCCCA GCAACTTGTC AGAAGTTAAA TGTTGGATAG GAGAGATGGC
  TCAGTGGATC TGCCACCAAG CCAGAGGACC TGAGTTGATC CTCAAGACAA GTGATGGGGG
  T
  GGGGGGGAGG GGGAGATTAA GAAAAAAGAC AGAAAATGTA CGAACACATT TGTCCTTTGA
  CCTCTGTGGT GGTTCCAGTC TGCAAAGTCC TTGCTGCACC CAAAGGAGGA CCTGAGTTCA
  GATCCTTAAA ACCCCTAAAA GGTCAGGTGA GGGGAGTGAA CGGAACCCCA AAGCTGGGGG
  AACAAAGACA AGCACATTTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
ss400215670	MGP_WTSI_18_33625257	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
rs236405722					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400215670	MGP_WTSI_18_33625257	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33598656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	1103 bp distal
Gm10549	predicted gene 10549	within coordinates
Nrep	neuronal regeneration related protein	1574 bp upstream
Rr352671	regulatory region 352671	655 bp distal
Tssr152763	transcription start site region 152763	1973 bp upstream
Tssr152764	transcription start site region 152764	1945 bp upstream
Tssr152765	transcription start site region 152765	1801 bp upstream
Tssr152766	transcription start site region 152766	1747 bp upstream
Tssr152767	transcription start site region 152767	1699 bp upstream
Tssr152768	transcription start site region 152768	1539 bp upstream
Tssr152769	transcription start site region 152769	1217 bp upstream