rs236416223 SNP Detail

Summary

• ID
  rs236416223
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100463997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGCCCTA TCTCCAGAGC
  CCACTCTACC CGTGATCCCC TCCTCTCATT CAAATGGTTC CCGGTCCCCT CCCCCTCCCC
  GTGGCTCTCC GCTTCCCACT CGTGTTCCCC CCAGCGTCCC CCCTCAGCAC TCCCTACCTA
  CGCCATGCAG CAGACGCCTG CCAAGATTAC CCTCCCCCAT CCCCACCTCT CCGGGGCCCG
  S
  CCCCCCGGGC GACTGTTGGG GTAGTGACAG CGGAGAATGG GGGAGGCAAA GACCCAACCC
  TCAAGTGCCC CTCCTCCCCT TGTCTGCAAC CTCAGCCCCC ACTTCCAACC TGTCTAAGAG
  TCGTAGTTAT GGGGTGTCTT AAGCTTACCC TTGCCAGTTA AATGGTTCTG GCTTAGTGAC
  AACGCCTATG CAGTAACGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404179319	MGP_WTSI_X_98615730	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236416223					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404179319	MGP_WTSI_X_98615730	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100463997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22868	CpG island 22868	958 bp distal
Cpgi22869	CpG island 22869	104 bp distal
Rr692835	regulatory region 692835	686 bp distal
Rr692836	regulatory region 692836	within coordinates
Tssr163885	transcription start site region 163885	604 bp upstream
Tssr163886	transcription start site region 163886	532 bp upstream
Tssr163887	transcription start site region 163887	166 bp upstream
Tssr163888	transcription start site region 163888	27 bp upstream
Tssr163889	transcription start site region 163889	749 bp downstream
Zmym3	zinc finger, MYM-type 3	within coordinates