rs236423888 SNP Detail

Summary

• ID
  rs236423888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29583818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGGTCT CTTAAGTAGT
  TCCCACAGCC ATTTCTCCAC CTGCCTGGCC ACCGTCCACT CTTGTTTGGT TACACACTAT
  GACAGGATGG CATGATTCAG GGTACAGAGG GCCAGCGATG GAACCCTCTC GGCTACAGCT
  GCCCCTCAGA TGAACATGCC TATGGGCTGC TTGTCTGCAA TCTCCCAGAG TTGTTCTCAT
  Y
  AGGAGTCTGG ATAGTCAAAG CTAGCTTCCA GGACAGGGGA GGTACCTTGA TGATTTAGTG
  TGCTCTACTA AGAGGCTGGT GAGGGAAGGG GACAACTACT ACCACAGAAA AGCATTTGTT
  GCTTGCCCTA AGAGGCTATT TATAGAATCA GCACCTTGGG GTGGGGGGAA CAAAACAAAA
  CAAAAAACCC AAATAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385439843	MGP_WTSI_12_30218684	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236423888					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385439843	MGP_WTSI_12_30218684	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29583818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4517	CpG island 4517	930 bp proximal
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464425	regulatory region 464425	within coordinates
Rr464426	regulatory region 464426	377 bp proximal
Rr464427	regulatory region 464427	807 bp proximal
Rr464428	regulatory region 464428	1110 bp proximal
Tssr113063	transcription start site region 113063	528 bp downstream
Tssr113064	transcription start site region 113064	504 bp downstream
Tssr113065	transcription start site region 113065	455 bp downstream
Tssr113066	transcription start site region 113066	373 bp downstream
Tssr113067	transcription start site region 113067	352 bp downstream
Tssr113068	transcription start site region 113068	327 bp downstream
Tssr113069	transcription start site region 113069	742 bp upstream
Tssr113070	transcription start site region 113070	897 bp upstream
Tssr113071	transcription start site region 113071	1028 bp upstream
Tssr113072	transcription start site region 113072	1362 bp upstream
Tssr113073	transcription start site region 113073	1390 bp upstream