rs236427972 SNP Detail

Summary

• ID
  rs236427972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31766216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATATTTG TGTGCAAGCA
  CCTTTGCTTG CTGAACTATC TCATCACCTC CTTGAGTATT AGTAACTTTA TTTTATTTTT
  TTTAAGATTT TTTAAAATTT ATTTTATTTA TATAAGTACA CTGTGGTTGT CTTCAGACAC
  CAGAAGAGGG CATCGGATGC CATGACTGAT GGTTGTGAGC CACTCACCAT GTGGTTACTG
  R
  GAATTGAACT CAGGACCTTT GTAAGAGCAA TCAGTACTCT TAACCACTGA GCCAACTCTC
  CAGCATCCCT CCCCCCAATT TAAATTTTTT TTTTTGTTTT TTGGATTTTT GTATTAATAA
  CTTTAAAGGA GTAGTTTGAG ACCGTGGCAG AACTCAGCAA GATGTGCACA CTAGCCAGGG
  CCAATGGCAC AAGCCTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400176085	MGP_WTSI_18_31792817	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236427972					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400176085	MGP_WTSI_18_31792817	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31766216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	674 bp proximal
Gm58914	predicted gene, 58914	within coordinates
Rr370349	regulatory region 370349	1345 bp upstream
Rr405571	regulatory region 405571	980 bp upstream
Rr405572	regulatory region 405572	1634 bp upstream
Rr535275	regulatory region 535275	218 bp distal
Rr535276	regulatory region 535276	648 bp distal
Rr535277	regulatory region 535277	600 bp distal
Rr535278	regulatory region 535278	within coordinates
Rr535279	regulatory region 535279	1028 bp proximal
Rr535280	regulatory region 535280	1231 bp proximal
Rr535281	regulatory region 535281	1297 bp proximal
Rr535282	regulatory region 535282	1811 bp proximal
Sap130	Sin3A associated protein	1220 bp upstream
Tssr150348	transcription start site region 150348	1153 bp upstream
Tssr150349	transcription start site region 150349	1205 bp upstream
Tssr150350	transcription start site region 150350	1211 bp upstream
Tssr150351	transcription start site region 150351	1911 bp upstream
Tssr152716	transcription start site region 152716	1606 bp downstream