rs236438417 SNP Detail

Summary

• ID
  rs236438417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140906733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACAGGT CTACCAGCAG
  TAATGCTGCT GACCATACCT GGGGCACCTC TAGAACAGAA CTCACATGTG ACCCATCTGT
  GCTCTCAGCT CCCAGGAAGC AGCAGGAGAG GACAAGGCAG GTGGTAGGTA CTGAGAAAGT
  TCCAAAGGGT AAAACAGACA AAGAACAGAG AGGCACACTC ACACAAGGGA GACACGTCTG
  Y
  ATACAGTGCA GAGCAAGGCT AGAGGAGTGA GAGTGTGCTG TGCGTGTGCA TGTGTGTGTG
  CAAGATGGGC ATGCAGGGCA CTGTGAGATG CAGGGCAGGG AAAGAGCAAG GGTGCAAGTC
  ATTGTGAGAT GCATGGGCAG GTGCAGAGTA GGTGTTCAGG GCATTGTGAG TGCACGGGCA
  GGTGTGAAGT GCACAGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373429746	MGP_WTSI_7_148512719	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236438417					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373429746	MGP_WTSI_7_148512719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140906733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19932	CpG island 19932	within coordinates
Deaf1	DEAF1, transcription factor	within coordinates
Rr166953	regulatory region 166953	within coordinates
Rr400715	regulatory region 400715	1033 bp upstream
Tmem80	transmembrane protein 80	1313 bp upstream
Tssr69944	transcription start site region 69944	1020 bp upstream
Tssr69945	transcription start site region 69945	1302 bp upstream
Tssr69946	transcription start site region 69946	1322 bp upstream
Tssr69947	transcription start site region 69947	1385 bp upstream
Tssr75631	transcription start site region 75631	690 bp downstream
Tssr75632	transcription start site region 75632	737 bp downstream
Tssr75633	transcription start site region 75633	829 bp downstream
Tssr75634	transcription start site region 75634	855 bp downstream
Tssr75635	transcription start site region 75635	880 bp downstream
Tssr75636	transcription start site region 75636	918 bp downstream
Tssr75637	transcription start site region 75637	1361 bp downstream