rs236439935 SNP Detail

Summary

• ID
  rs236439935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31241784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACTCTT AGAGTTGCCT
  GCAGAAGAAA AAAAATTCCC CTCACCTCCA GGGATGCTTA GGAGAGGGAA ACAGGTTGGG
  GAAGAGTAAA CAGGCTTTTA GAAAGAGGTC CTGGCAACTC CAAAAGAAAA GACGCAGAGC
  CAGGCTGTTT TGGTGCATGT CTTTAATCAT AGCACTTGGG AGGCAGAGGC AAGAGTATCT
  Y
  TGTGAGTTCA AGGCCAACCT GGTCTACAGA GCAGGATCCA GATCAGCTAG GGTTACACAG
  AGAAAACCTG TCTCTAAAAC CAAAAAGAAA ACAAACAGAC AAACAAACAA ACAGCCCAAA
  AGAAAAAACA AAATCCAAAC AGAAAGACTA AGTAGCGCTG CAACTGGAAA AGCCAGATTT
  TAACTCTGGT ACCATCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325134042	CHEV_16_31423052	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236439935					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31241784 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	within coordinates
Rr514474	regulatory region 514474	676 bp distal
Rr514475	regulatory region 514475	566 bp distal
Rr514476	regulatory region 514476	1461 bp proximal
Tssr137893	transcription start site region 137893	688 bp downstream
Tssr137894	transcription start site region 137894	658 bp downstream
Tssr137895	transcription start site region 137895	619 bp downstream
Tssr140755	transcription start site region 140755	1588 bp upstream