rs236439953 SNP Detail

Summary

• ID
  rs236439953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91443159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGGGT TTAGTCTCCC
  AGCACCCACA AGGTGGCTCA CAAACATCCT AATCTGGGTC TGGAGACTGA ATGCTTTCTT
  CCGGCTTCTT TGGGGCGTTC ATTGTATGCA CGTGGGCACA AACATACATG TAAGGGACAA
  CGCTCCTACA CATAAGATAG ACTTTAGTTC AATTCTGTGT CATTTTCTTA GAGAAATAGC
  Y
  GAAGCCATTA AACTTTTTAA AAAATCTAAC TTGAATAAGA AAGCAGTGCA AGAAGACAAT
  TTTCATTTTA CTAGTCAGGA TCTGTGAAAT AGCAGGACTG GTCTCTTCAC CAGCAGCGGC
  TGGGTGCCTG GGCTCCGGTG TCAAGGCCTT ACTAGCCGGG AGACTCGGAG AGTCTTTTGT
  AACTTCTTGG GTGTCAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397326511	MGP_WTSI_16_91646516	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236439953					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397326511	MGP_WTSI_16_91646516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91443159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	398 bp proximal
Gart	phosphoribosylglycinamide formyltransferase	within coordinates
Rr319637	regulatory region 319637	559 bp distal
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	1287 bp upstream
Son	Son DNA binding protein	1553 bp upstream
Tssr139422	transcription start site region 139422	789 bp upstream
Tssr139423	transcription start site region 139423	1571 bp upstream
Tssr139424	transcription start site region 139424	1588 bp upstream
Tssr142101	transcription start site region 142101	635 bp downstream
Tssr142102	transcription start site region 142102	1358 bp downstream
Tssr142103	transcription start site region 142103	1420 bp downstream