rs236442971 SNP Detail

Summary

• ID
  rs236442971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67142903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGACA TTGACGACCT
  TGAGCTGACA CTGGCCAAGG TTGAGAAGGA GAAGCACGCC ACGGAGAACA AGGTACAACC
  ACTATTCACT TTCAAGCATT TACAAATACT CAAGCCTGAC TCTTAAACCT TAAAATCATG
  GAACGTGAAA GGGAAAATGT TACAATGTTG CCATCTTTTT TATGGCTGCT GTATTCCCTG
  W
  CAGGATGTTG TCCTGAGAAG TTAAATTATC ATGTATTTTG GCAAGATGAC ATGTTTTTTT
  TTTTTTTTTT AATCAACATT CCCATCATCT GTCCAAATCT AAAGGTGAAA AACCTGACAG
  AAGAGATGGC AGGCCTGGAT GAAAATATCG CCAAGCTGAC CAAGGAGAAG AAGGCCCTCC
  AGGAGGCCCA CCAGCAGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730813	MGP_WTSI_11_67065579	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236442971					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730813	MGP_WTSI_11_67065579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67142903 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Rr449442	regulatory region 449442	1721 bp proximal
Tssr3526	transcription start site region 3526	1700 bp downstream
Tssr3527	transcription start site region 3527	1200 bp upstream
Tssr102188	transcription start site region 102188	1739 bp downstream
Tssr102189	transcription start site region 102189	1551 bp downstream
Tssr102190	transcription start site region 102190	1535 bp downstream
Tssr102191	transcription start site region 102191	1514 bp downstream
Tssr102192	transcription start site region 102192	1508 bp downstream
Tssr102193	transcription start site region 102193	1465 bp downstream
Tssr102194	transcription start site region 102194	1323 bp downstream
Tssr102195	transcription start site region 102195	1240 bp downstream
Tssr102196	transcription start site region 102196	1201 bp downstream
Tssr102197	transcription start site region 102197	1157 bp downstream
Tssr102198	transcription start site region 102198	1096 bp downstream
Tssr102199	transcription start site region 102199	342 bp downstream
Tssr102200	transcription start site region 102200	191 bp downstream
Tssr102201	transcription start site region 102201	1398 bp upstream
Tssr102202	transcription start site region 102202	1920 bp upstream
Tssr102203	transcription start site region 102203	1980 bp upstream
Tssr108528	transcription start site region 108528	1433 bp upstream
Tssr108529	transcription start site region 108529	1119 bp upstream
Tssr108530	transcription start site region 108530	1117 bp upstream
Tssr108531	transcription start site region 108531	1089 bp upstream
Tssr108532	transcription start site region 108532	319 bp upstream
Tssr108533	transcription start site region 108533	167 bp upstream
Tssr108534	transcription start site region 108534	519 bp downstream
Tssr108535	transcription start site region 108535	615 bp downstream
Tssr108536	transcription start site region 108536	1967 bp downstream
Tssr108537	transcription start site region 108537	1979 bp downstream