rs236450168 SNP Detail

Summary

• ID
  rs236450168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTTTC TTCCAGTAGC
  AGCTATGCGG TGGACAGAGA GAGAGGGGGA GAGGGAGAGG GAGAGGGAGA GGGAGAGGGA
  GAGGGAGAGG GAGAGGGAGA GGGAGAGGGA GAGGGAGAGG GAGAGGGAGA GGGAGAGGGA
  GAGGGAGAGA GAGAGAGAGA GGGAGCACAC TTGTTTCTGA GTGCTATGAT CCTTGCATAT
  Y
  TACCATCCAC TAACTGAAAA TATTGATACT TCTTGTTTTA GAAAAGTCCA GGTACACAGT
  GTTGGAGGAG CAGGGCATAG GGCCCTGCAA AATCAAACCT TAAAGGCAAA ATTTGTTTTT
  TAGCACAGAT TTTCATTGTC TATCATATCT CAAATGCTTT CATTTTCATC TGCTACCCTC
  TTTAGTGATA ATAATAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351966850	MGP_WTSI_1_155034903	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236450168					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351966850	MGP_WTSI_1_155034903	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1306 bp distal
Lamc2	laminin, gamma 2	1326 bp upstream
Rr13130	regulatory region 13130	319 bp distal
Rr25076	regulatory region 25076	473 bp proximal
Rr28719	regulatory region 28719	1118 bp distal
Tssr14250	transcription start site region 14250	1717 bp upstream
Tssr14251	transcription start site region 14251	1681 bp upstream
Tssr14252	transcription start site region 14252	1651 bp upstream
Tssr14253	transcription start site region 14253	1637 bp upstream
Tssr14254	transcription start site region 14254	1618 bp upstream