rs236455289 SNP Detail

Summary

• ID
  rs236455289
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23945660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCGGGAA AGACGCAAAA
  GCCCGCCGGC GGGAAAGTGA CTTCACAAAT TCCGCCCCTC AGTCACGACC AGAAAGCGCG
  CCGGCGGGAA AGTGATGTCA CATATCTCGC CCATCAGCCC CGCCCCGAAA GCCGGACGGC
  GGGAAAAGTG ACATCACAGA CCCCTCTCTG GATCGGAGCC CTATAAGGAC CGAAAGCCTG
  S
  GAGTAGGTCA CGTCAGAGAT CCGACCTGTA CACTTTACGC ATATTCCACG GGTAAAACCA
  GACAATCAGT TGACCTATTT TGTACTTGAT ATCAACTTTG GGCTGTTATA AACTCAAGTT
  TTGGGGAATA TCCACCGTTA TAGACACTAG GGAATATATA GGTTCGTTTA AGGATGGAGT
  AAATTACAGC CATTTTACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387989676	MGP_WTSI_13_23853546	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236455289					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387989676	MGP_WTSI_13_23853546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23945660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Cpgi5377	CpG island 5377	1841 bp proximal
Gm61378	predicted gene, 61378	within coordinates
Gm61381	predicted gene, 61381	914 bp downstream
H1f1	H1.1 linker histone, cluster member	1989 bp upstream
H3c1	H3 clustered histone 1	208 bp downstream
H4c1	H4 clustered histone 1	428 bp upstream
Rr388132	regulatory region 388132	within coordinates
Rr403665	regulatory region 403665	1761 bp upstream
Rr475945	regulatory region 475945	219 bp distal
Rr475946	regulatory region 475946	699 bp proximal
Rr475947	regulatory region 475947	1847 bp proximal
Tssr118865	transcription start site region 118865	1983 bp upstream
Tssr121749	transcription start site region 121749	489 bp upstream
Tssr121750	transcription start site region 121750	461 bp upstream
Tssr121751	transcription start site region 121751	441 bp upstream
Tssr121752	transcription start site region 121752	685 bp downstream
Tssr121753	transcription start site region 121753	701 bp downstream
Tssr121754	transcription start site region 121754	1825 bp downstream
Tssr121755	transcription start site region 121755	1842 bp downstream