rs236456682 SNP Detail

Summary

• ID
  rs236456682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59436351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggtactct tgggtgttgc aagaaagcag
  gctgagcaag ccatggagat tgagtcagta agcagcactc ctccattgct tctgcttcaa
  ttcctgcctc catggtcctg ccttgagtgt ttgccttgac ttctttctct aaaggactgt
  R
  atctgagaat tgtaagctaa aataaactct ttcctcccca aattgtttct ggctgtgctg
  ttttatcaca gtagaaaccc taaGACAGAG ACCCAAGGGG GAAGGAAGAA AGCCTACTGA
  AGTACCAGAT GTCAGAGGTG GAGGGGAGCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141013	CHEV_4_59449223	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236456682					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59436351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	1538 bp proximal
Rr101075	regulatory region 101075	649 bp proximal
Susd1	sushi domain containing 1	within coordinates
Tssr37429	transcription start site region 37429	1981 bp downstream
Tssr37430	transcription start site region 37430	1802 bp upstream
Tssr41933	transcription start site region 41933	1939 bp downstream
Tssr41934	transcription start site region 41934	1994 bp downstream