rs236461838 SNP Detail

Summary

• ID
  rs236461838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60959197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCACAA CCAAACCAAA
  AGAAATGCTT CCAACCCACC AGCCATGAAT GAGATTCCAG TCTACCTTTA CAGAAGGGGT
  AGTATACTTA CTCTCTGGCT GGAAGATAAG CTCATACACC CAGACTATCA GCAGAGTACA
  CAGGACACTC CACGCAATGA GCTGCCAGGG CTCATATTTG GTGCAATATC CATTCACATA
  R
  TTCTTGGCTT TTGTGGAATA TGATTCCAAA ATCTCCAAAT AAGGCTCGAA GTCCTTCTAG
  AAATATAAGA AGAAAAACAG AAACATTACA TTCAGAGAAA GGAAGTCTGC TCTTGGTTTG
  TTCAATTCTC ATTTTTCAAG GGCAAAGCTG TTACTCAAGA TGAGGGCTCC ACCTCAGCAA
  TAATCTTATC ATCTTCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327700	CHEV_10_60586166	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236461838					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60959197 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1719 bp downstream
Rr401931	regulatory region 401931	1283 bp downstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates