rs236477965 SNP Detail

Summary

• ID
  rs236477965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40058582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCTCTG GTTTGTTTAT
  AACTGATGTA TTTGTATCTC CTAGAGGTAA TTAGTCTTAT AAAGTTAGAA AAAAACATAT
  TTATACCTGT TAAGTCTTTC TCCAATTGGT ACACAATGAA TGAATTTATG TTAAATGAAT
  TAGTGAATGA ATGGATGGAC AGACCCCTAT TTCAATCTCT ATTTGTATTT GAGGAAAATA
  Y
  CTTACATTTC AAGAACTAAT ACTTAATCAA TATCAATTAA GTTTTTCTTA GAATTTAATA
  GGATTCTGCA CAGTTAGGTG AGGGGAACAG CAGAAGGTCT GAAGAAGGCA GGAACATCCC
  TCTACTCAAC AGGTAGAGCA TCTAGGTAAA AGGTGCCAGG GGATGGGAGT CATTGTAGCA
  GAGCATATGC CATAAGGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374370431	MGP_WTSI_8_40690895	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236477965					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374370431	MGP_WTSI_8_40690895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40058582 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	67 bp upstream
Tssr80996	transcription start site region 80996	959 bp upstream
Tssr80997	transcription start site region 80997	936 bp upstream
Tssr80998	transcription start site region 80998	523 bp upstream
Tssr80999	transcription start site region 80999	461 bp upstream
Tssr81000	transcription start site region 81000	277 bp upstream
Tssr81001	transcription start site region 81001	261 bp upstream
Tssr81002	transcription start site region 81002	235 bp upstream
Tssr81003	transcription start site region 81003	209 bp upstream
Tssr81004	transcription start site region 81004	157 bp upstream
Tssr81005	transcription start site region 81005	132 bp upstream
Tssr81006	transcription start site region 81006	95 bp upstream
Tssr81007	transcription start site region 81007	30 bp upstream
Tssr81008	transcription start site region 81008	63 bp downstream
Tssr81009	transcription start site region 81009	79 bp downstream
Tssr81010	transcription start site region 81010	106 bp downstream
Tssr81011	transcription start site region 81011	184 bp downstream
Tssr81012	transcription start site region 81012	209 bp downstream
Tssr81013	transcription start site region 81013	377 bp downstream
Tssr81014	transcription start site region 81014	404 bp downstream